3D structure

PDB id
9B50 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCAAG*CGACG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9B50_162 not in the Motif Atlas
Geometric match to IL_8B0X_153
Geometric discrepancy: 0.1041
The information below is about IL_8B0X_153
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_87767.1
Basepair signature
cWW-L-R-tSH-tHS-cWW
Number of instances in this motif group
16

Unit IDs

9B50|1|BA|C|2466
9B50|1|BA|C|2467
9B50|1|BA|A|2468
9B50|1|BA|A|2469
9B50|1|BA|G|2470
*
9B50|1|BA|C|2480
9B50|1|BA|G|2481
9B50|1|BA|A|2482
9B50|1|BA|C|2483
9B50|1|BA|G|2484

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B4
50S ribosomal protein L36
Chain BM
50S ribosomal protein L16

Coloring options:


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