IL_9B50_168

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9B50|1|BA|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_168 not in the Motif Atlas

Geometric match to IL_8B0X_160

Geometric discrepancy: 0.0396

The information below is about IL_8B0X_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04638.4

Basepair signature

cWW-tSH-tHW-tHS-L-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9B50|1|BA|C|2636
9B50|1|BA|U|2637
9B50|1|BA|G|2638
9B50|1|BA|A|2639
9B50|1|BA|G|2640
*
9B50|1|BA|C|2774
9B50|1|BA|G|2775
9B50|1|BA|A|2776
9B50|1|BA|G|2777
9B50|1|BA|A|2778
9B50|1|BA|U|2779
9B50|1|BA|G|2780
9B50|1|BA|A|2781
9B50|1|BA|G|2782

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BJ

50S ribosomal protein L13