IL_9B50_169

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_169 not in the Motif Atlas

Geometric match to IL_8B0X_161

Geometric discrepancy: 0.0474

The information below is about IL_8B0X_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_16458.5

Basepair signature

cWW-L-R-L-R-cSH-tWH-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9B50|1|BA|C|2652
9B50|1|BA|U|2653
9B50|1|BA|A|2654
9B50|1|BA|G|2655
9B50|1|BA|U|2656
9B50|1|BA|A|2657
9B50|1|BA|C|2658
*
9B50|1|BA|G|2663
9B50|1|BA|G|2664
9B50|1|BA|A|2665
9B50|1|BA|C|2666
9B50|1|BA|C|2667
9B50|1|BA|G|2668

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BG

50S ribosomal protein L6