IL_9B50_171

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

9B50|1|BA|U|2689, 9B50|1|BA|U|2690

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_171 not in the Motif Atlas

Geometric match to IL_8B0X_163

Geometric discrepancy: 0.0514

The information below is about IL_8B0X_163

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82016.1

Basepair signature

cWW-L-tHS-L-cWW

Number of instances in this motif group

4

Unit IDs

9B50|1|BA|U|2687
9B50|1|BA|G|2688
9B50|1|BA|U|2689
9B50|1|BA|U|2690
9B50|1|BA|C|2691
*
9B50|1|BA|G|2718
9B50|1|BA|G|2719
9B50|1|BA|U|2720
9B50|1|BA|A|2721
9B50|1|BA|G|2722

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L3

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19