IL_9B50_172

3D structure

PDB id

9B50 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (unmethylated 16S A1408 + arbekacin)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UU*ACUG

Length

6 nucleotides

Bulged bases

9B50|1|BA|C|2712, 9B50|1|BA|U|2713

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B50_172 not in the Motif Atlas

Geometric match to IL_8B0X_164

Geometric discrepancy: 0.0596

The information below is about IL_8B0X_164

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44609.1

Basepair signature

cWW-cWW

Number of instances in this motif group

28

Unit IDs

9B50|1|BA|U|2695
9B50|1|BA|U|2696
*
9B50|1|BA|A|2711
9B50|1|BA|C|2712
9B50|1|BA|U|2713
9B50|1|BA|G|2714

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BN

50S ribosomal protein L17

Chain BP

50S ribosomal protein L19