IL_9B51_110

3D structure

PDB id

9B51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome complex (N1-methylated 16S A1408 + G418)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9B51|1|BA|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9B51_110 not in the Motif Atlas

Geometric match to IL_8B0X_107

Geometric discrepancy: 0.0538

The information below is about IL_8B0X_107

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9B51|1|BA|C|1208
9B51|1|BA|U|1209
9B51|1|BA|G|1210
9B51|1|BA|C|1211
9B51|1|BA|G|1212
9B51|1|BA|A|1213
9B51|1|BA|A|1214
9B51|1|BA|G|1215
*
9B51|1|BA|U|1234
9B51|1|BA|G|1235
9B51|1|BA|G|1236
9B51|1|BA|A|1237
9B51|1|BA|G|1238

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L20