IL_9BDL_027

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCACUC*GGAG

Length

10 nucleotides

Bulged bases

9BDL|1|A18S|G|507

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_027 not in the Motif Atlas

Homologous match to IL_4V88_408

Geometric discrepancy: 0.0887

The information below is about IL_4V88_408

Detailed Annotation

C-loop with extra cWW pair

Broad Annotation

C-loop

Motif group

IL_11347.2

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

3

Unit IDs

9BDL|1|A18S|C|491
9BDL|1|A18S|C|492
9BDL|1|A18S|A|493
9BDL|1|A18S|C|494
9BDL|1|A18S|U|495
9BDL|1|A18S|C|496
*
9BDL|1|A18S|G|506
9BDL|1|A18S|G|507
9BDL|1|A18S|A|508
9BDL|1|A18S|G|509

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS09

40S ribosomal protein S9

Chain AS24

40S ribosomal protein S24