IL_9BDL_034

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUGCCAG*CGGUAAUUC

Length

16 nucleotides

Bulged bases

9BDL|1|A18S|A|628, 9BDL|1|A18S|U|630, 9BDL|1|A18S|U|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_034 not in the Motif Atlas

Homologous match to IL_4V88_415

Geometric discrepancy: 0.1669

The information below is about IL_4V88_415

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_54177.1

Basepair signature

cWW-cSW-tWH-L-R-L-R-tHS-cWW

Number of instances in this motif group

5

Unit IDs

9BDL|1|A18S|G|611
9BDL|1|A18S|U|612
9BDL|1|A18S|G|613
9BDL|1|A18S|C|614
9BDL|1|A18S|C|615
9BDL|1|A18S|A|616
9BDL|1|A18S|G|617
*
9BDL|1|A18S|C|624
9BDL|1|A18S|G|625
9BDL|1|A18S|G|626
9BDL|1|A18S|U|627
9BDL|1|A18S|A|628
9BDL|1|A18S|A|629
9BDL|1|A18S|U|630
9BDL|1|A18S|U|631
9BDL|1|A18S|C|632

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain ANG

Angiogenin

Chain AS03

40S ribosomal protein S3

Chain AS23

40S ribosomal protein S23

Chain AS30

40S ribosomal protein S30

Chain MRNA

Model mRNA