IL_9BDL_050

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGGGG*CAAG

Length

9 nucleotides

Bulged bases

9BDL|1|A18S|G|933

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_050 not in the Motif Atlas

Homologous match to IL_8C3A_438

Geometric discrepancy: 0.0877

The information below is about IL_8C3A_438

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

9BDL|1|A18S|C|931
9BDL|1|A18S|G|932
9BDL|1|A18S|G|933
9BDL|1|A18S|G|934
9BDL|1|A18S|G|935
*
9BDL|1|A18S|C|1007
9BDL|1|A18S|A|1008
9BDL|1|A18S|A|1009
9BDL|1|A18S|G|1010

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL30

60S ribosomal protein L30

Chain AS01

40S ribosomal protein S3a

Chain AS13

40S ribosomal protein S13

Chain AS26

eS26