IL_9BDL_071
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 9BDL|1|A18S|U|1494, 9BDL|1|A18S|G|1497
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_071 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1147
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
9BDL|1|A18S|U|1333
9BDL|1|A18S|G|1334
9BDL|1|A18S|G|1335
*
9BDL|1|A18S|U|1492
9BDL|1|A18S|C|1493
9BDL|1|A18S|U|1494
9BDL|1|A18S|G|1495
9BDL|1|A18S|U|1496
9BDL|1|A18S|G|1497
9BDL|1|A18S|A|1498
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ANG
- Angiogenin
- Chain AS03
- 40S ribosomal protein S3
- Chain AS10
- 40S ribosomal protein S10
- Chain AS20
- 40S ribosomal protein S20
- Chain AS29
- 40S ribosomal protein S29
Coloring options: