IL_9BDL_132

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9BDL|1|A28S|G|748, 9BDL|1|A28S|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_132 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2491

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BDL|1|A28S|G|745
9BDL|1|A28S|A|746
9BDL|1|A28S|A|747
9BDL|1|A28S|G|748
9BDL|1|A28S|G|749
9BDL|1|A28S|U|750
9BDL|1|A28S|G|751
9BDL|1|A28S|G|752
*
9BDL|1|A28S|U|911
9BDL|1|A28S|G|912
9BDL|1|A28S|U|913
9BDL|1|A28S|U|914
9BDL|1|A28S|A|915
9BDL|1|A28S|C|916
9BDL|1|A28S|A|917
9BDL|1|A28S|G|918
9BDL|1|A28S|C|919

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

Large ribosomal subunit protein eL14

Chain AL20

60S ribosomal protein L18a