IL_9BDL_168
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 9BDL|1|A28S|U|2070
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_168 not in the Motif Atlas
- Homologous match to IL_5TBW_048
- Geometric discrepancy: 0.1004
- The information below is about IL_5TBW_048
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
9BDL|1|A28S|U|1905
9BDL|1|A28S|U|1906
9BDL|1|A28S|A|1907
9BDL|1|A28S|A|1908
9BDL|1|A28S|G|1909
*
9BDL|1|A28S|C|2067
9BDL|1|A28S|C|2068
9BDL|1|A28S|A|2069
9BDL|1|A28S|U|2070
9BDL|1|A28S|A|2071
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A5S
- 5S ribosomal RNA; 5S rRNA
- Chain AL07
- 60S ribosomal protein L7
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL32
- Large ribosomal subunit protein eL32
- Chain AL33
- 60S ribosomal protein L35a
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