IL_9BDL_169
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_169 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1412
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
9BDL|1|A28S|C|1911
9BDL|1|A28S|G|1912
9BDL|1|A28S|C|1913
9BDL|1|A28S|C|1914
9BDL|1|A28S|C|1915
9BDL|1|A28S|G|1916
9BDL|1|A28S|A|1917
9BDL|1|A28S|U|1918
*
9BDL|1|A28S|G|2064
9BDL|1|A28S|G|2065
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL07
- 60S ribosomal protein L7
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL20
- 60S ribosomal protein L18a
- Chain AL33
- 60S ribosomal protein L35a
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