IL_9BDL_172
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- CUCAUCAG*CUGGAG
- Length
- 14 nucleotides
- Bulged bases
- 9BDL|1|A28S|U|1930, 9BDL|1|A28S|C|1931, 9BDL|1|A28S|G|2055, 9BDL|1|A28S|A|2057
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_172 not in the Motif Atlas
- Homologous match to IL_5TBW_051
- Geometric discrepancy: 0.1302
- The information below is about IL_5TBW_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_27086.1
- Basepair signature
- cWW-tWW-L-tWW-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9BDL|1|A28S|C|1926
9BDL|1|A28S|U|1927
9BDL|1|A28S|C|1928
9BDL|1|A28S|A|1929
9BDL|1|A28S|U|1930
9BDL|1|A28S|C|1931
9BDL|1|A28S|A|1932
9BDL|1|A28S|G|1933
*
9BDL|1|A28S|C|2053
9BDL|1|A28S|U|2054
9BDL|1|A28S|G|2055
9BDL|1|A28S|G|2056
9BDL|1|A28S|A|2057
9BDL|1|A28S|G|2058
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL09
- 60S ribosomal protein L9
- Chain AL14
- Large ribosomal subunit protein eL14
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL20
- 60S ribosomal protein L18a
- Chain AL40
- Large ribosomal subunit protein eL40
Coloring options: