IL_9BDL_176

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

9BDL|1|A28S|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_176 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.3577

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

9BDL|1|A28S|U|1957
9BDL|1|A28S|A|1958
9BDL|1|A28S|U|1959
9BDL|1|A28S|A|1960
9BDL|1|A28S|G|1961
9BDL|1|A28S|A|1962
9BDL|1|A28S|C|1963
9BDL|1|A28S|A|1964
9BDL|1|A28S|G|1965
*
9BDL|1|A28S|C|2022
9BDL|1|A28S|C|2023
9BDL|1|A28S|G|2024
9BDL|1|A28S|A|2025
9BDL|1|A28S|A|2026

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL20

60S ribosomal protein L18a

Chain AL40

Large ribosomal subunit protein eL40