IL_9BDL_189

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_189 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2063

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

9BDL|1|A28S|C|2589
9BDL|1|A28S|G|2590
9BDL|1|A28S|A|2591
9BDL|1|A28S|U|2592
9BDL|1|A28S|C|2593
*
9BDL|1|A28S|G|2752
9BDL|1|A28S|G|2753
9BDL|1|A28S|G|2754
9BDL|1|A28S|A|2755
9BDL|1|A28S|G|2756

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AL27

60S ribosomal protein L27

Chain AL34

60S ribosomal protein L34