IL_9BDL_194
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 9BDL|1|A28S|U|2661, 9BDL|1|A28S|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_194 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1469
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
9BDL|1|A28S|U|2656
9BDL|1|A28S|G|2657
9BDL|1|A28S|G|2658
9BDL|1|A28S|A|2659
9BDL|1|A28S|A|2660
9BDL|1|A28S|U|2661
9BDL|1|A28S|G|2662
*
9BDL|1|A28S|C|2672
9BDL|1|A28S|G|2673
9BDL|1|A28S|A|2674
9BDL|1|A28S|G|2675
9BDL|1|A28S|A|2676
9BDL|1|A28S|G|2677
9BDL|1|A28S|A|2678
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL19
- 60S ribosomal protein L19
- Chain AL27
- 60S ribosomal protein L27
- Chain AL30
- 60S ribosomal protein L30
- Chain AL43
- 60S ribosomal protein L37a
- Chain AS13
- 40S ribosomal protein S13
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