IL_9BDL_225
3D structure
- PDB id
- 9BDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDL_225 not in the Motif Atlas
- Homologous match to IL_5TBW_100
- Geometric discrepancy: 0.2662
- The information below is about IL_5TBW_100
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
9BDL|1|A28S|U|4295
9BDL|1|A28S|U|4296
9BDL|1|A28S|G|4297
9BDL|1|A28S|A|4298
*
9BDL|1|A28S|U|4312
9BDL|1|A28S|A|4313
9BDL|1|A28S|C|4314
9BDL|1|A28S|A|4315
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL05
- Large ribosomal subunit protein uL18
- Chain AL18
- Large ribosomal subunit protein eL18
- Chain AL21
- 60S ribosomal protein L21
- Chain AL29
- Large ribosomal subunit protein eL29
- Chain AL42
- eL42
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