IL_9BDL_240

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9BDL|1|A28S|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_240 not in the Motif Atlas

Homologous match to IL_8C3A_123

Geometric discrepancy: 0.1366

The information below is about IL_8C3A_123

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

9BDL|1|A28S|C|4582
9BDL|1|A28S|C|4583
9BDL|1|A28S|A|4584
9BDL|1|A28S|U|4585
*
9BDL|1|A28S|A|4717
9BDL|1|A28S|G|4718
9BDL|1|A28S|G|4719
9BDL|1|A28S|C|4720
9BDL|1|A28S|G|4721

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL16

Large ribosomal subunit protein uL13