IL_9BDL_249

3D structure

PDB id

9BDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDL_249 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.1906

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BDL|1|A28S|G|4743
9BDL|1|A28S|A|4744
9BDL|1|A28S|G|4745
9BDL|1|A28S|C|4746
*
9BDL|1|A28S|G|4954
9BDL|1|A28S|A|4955
9BDL|1|A28S|A|4956
9BDL|1|A28S|C|4957

Current chains

Chain A28S

28S rRNA

Nearby chains