IL_9BDN_010

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

9BDN|1|A18S|G|113, 9BDN|1|A18S|G|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_010 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.1614

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BDN|1|A18S|U|112
9BDN|1|A18S|G|113
9BDN|1|A18S|G|114
9BDN|1|A18S|U|115
*
9BDN|1|A18S|A|348
9BDN|1|A18S|A|349

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS04

40S ribosomal protein S4

Chain AS08

40S ribosomal protein S8

Chain AS11

40S ribosomal protein S11