IL_9BDN_033
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9BDN|1|A18S|A|628, 9BDN|1|A18S|U|630, 9BDN|1|A18S|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_033 not in the Motif Atlas
- Homologous match to IL_4V88_415
- Geometric discrepancy: 0.1615
- The information below is about IL_4V88_415
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A18S|G|611
9BDN|1|A18S|U|612
9BDN|1|A18S|G|613
9BDN|1|A18S|C|614
9BDN|1|A18S|C|615
9BDN|1|A18S|A|616
9BDN|1|A18S|G|617
*
9BDN|1|A18S|C|624
9BDN|1|A18S|G|625
9BDN|1|A18S|G|626
9BDN|1|A18S|U|627
9BDN|1|A18S|A|628
9BDN|1|A18S|A|629
9BDN|1|A18S|U|630
9BDN|1|A18S|U|631
9BDN|1|A18S|C|632
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain ANG
- Angiogenin
- Chain AS03
- 40S ribosomal protein S3
- Chain AS23
- 40S ribosomal protein S23
- Chain AS30
- 40S ribosomal protein S30
- Chain MRNA
- mRNA
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