IL_9BDN_050

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAU*AGAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_050 not in the Motif Atlas

Homologous match to IL_4V88_432

Geometric discrepancy: 0.0993

The information below is about IL_4V88_432

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BDN|1|A18S|G|942
9BDN|1|A18S|U|943
9BDN|1|A18S|A|944
9BDN|1|A18S|U|945
*
9BDN|1|A18S|A|981
9BDN|1|A18S|G|982
9BDN|1|A18S|A|983
9BDN|1|A18S|C|984

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AL02

60S ribosomal protein L8

Chain AS01

40S ribosomal protein S3a

Chain AS14

Small ribosomal subunit protein uS11