IL_9BDN_061
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- ACCA*UCCCU
- Length
- 9 nucleotides
- Bulged bases
- 9BDN|1|A18S|C|1215, 9BDN|1|A18S|C|1216
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_061 not in the Motif Atlas
- Homologous match to IL_4V88_443
- Geometric discrepancy: 0.103
- The information below is about IL_4V88_443
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_63596.9
- Basepair signature
- cWW-cWS-cHS-L-cWW-tWH
- Number of instances in this motif group
- 15
Unit IDs
9BDN|1|A18S|A|1214
9BDN|1|A18S|C|1215
9BDN|1|A18S|C|1216
9BDN|1|A18S|A|1217
*
9BDN|1|A18S|U|1681
9BDN|1|A18S|C|1682
9BDN|1|A18S|C|1683
9BDN|1|A18S|C|1684
9BDN|1|A18S|U|1685
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS05
- Ribosomal protein S5
- Chain AS16
- Small ribosomal subunit protein uS9
- Chain AS28
- 40S ribosomal protein S28
- Chain ETRN
- Transfer RNA; tRNA
- Chain MRNA
- mRNA
- Chain PTRN
- Transfer RNA; tRNA
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