IL_9BDN_101
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CUGAAUUU*AUUAGUCAG
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_101 not in the Motif Atlas
- Geometric match to IL_4WF9_008
- Geometric discrepancy: 0.1599
- The information below is about IL_4WF9_008
- Detailed Annotation
- 9x8 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_93502.1
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
9BDN|1|A28S|C|30
9BDN|1|A28S|U|31
9BDN|1|A28S|G|32
9BDN|1|A28S|A|33
9BDN|1|A28S|A|34
9BDN|1|A28S|U|35
9BDN|1|A28S|U|36
9BDN|1|A28S|U|37
*
9BDN|1|A28S|A|44
9BDN|1|A28S|U|45
9BDN|1|A28S|U|46
9BDN|1|A28S|A|47
9BDN|1|A28S|G|48
9BDN|1|A28S|U|49
9BDN|1|A28S|C|50
9BDN|1|A28S|A|51
9BDN|1|A28S|G|52
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL13
- Large ribosomal subunit protein eL13
- Chain AL15
- 60S ribosomal protein L15
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL37
- 60S ribosomal protein L37
- Chain AL42
- eL42
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