IL_9BDN_134

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9BDN|1|A28S|G|748, 9BDN|1|A28S|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_134 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2583

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|G|745
9BDN|1|A28S|A|746
9BDN|1|A28S|A|747
9BDN|1|A28S|G|748
9BDN|1|A28S|G|749
9BDN|1|A28S|U|750
9BDN|1|A28S|G|751
9BDN|1|A28S|G|752
*
9BDN|1|A28S|U|911
9BDN|1|A28S|G|912
9BDN|1|A28S|U|913
9BDN|1|A28S|U|914
9BDN|1|A28S|A|915
9BDN|1|A28S|C|916
9BDN|1|A28S|A|917
9BDN|1|A28S|G|918
9BDN|1|A28S|C|919

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14

Chain AL20

60S ribosomal protein L18a