IL_9BDN_171

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_171 not in the Motif Atlas

Homologous match to IL_8C3A_052

Geometric discrepancy: 0.153

The information below is about IL_8C3A_052

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_84902.1

Basepair signature

cWW-L-cWW-L-L-R-cHH

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|C|1911
9BDN|1|A28S|G|1912
9BDN|1|A28S|C|1913
9BDN|1|A28S|C|1914
9BDN|1|A28S|C|1915
9BDN|1|A28S|G|1916
9BDN|1|A28S|A|1917
9BDN|1|A28S|U|1918
*
9BDN|1|A28S|G|2064
9BDN|1|A28S|G|2065

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL07

60S ribosomal protein L7

Chain AL16

Large ribosomal subunit protein uL13

Chain AL20

60S ribosomal protein L18a

Chain AL33

60S ribosomal protein L35a