IL_9BDN_180
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGC*GGUG
- Length
- 7 nucleotides
- Bulged bases
- 9BDN|1|A28S|G|2343
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_180 not in the Motif Atlas
- Homologous match to IL_5TBW_057
- Geometric discrepancy: 0.0717
- The information below is about IL_5TBW_057
- Detailed Annotation
- Isolated cWS basepair
- Broad Annotation
- Isolated cWS basepair
- Motif group
- IL_73554.3
- Basepair signature
- cWW-cWS-cWW
- Number of instances in this motif group
- 10
Unit IDs
9BDN|1|A28S|C|2290
9BDN|1|A28S|G|2291
9BDN|1|A28S|C|2292
*
9BDN|1|A28S|G|2342
9BDN|1|A28S|G|2343
9BDN|1|A28S|U|2344
9BDN|1|A28S|G|2345
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain A58S
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain AL04
- 60S ribosomal protein L4
- Chain AL28
- 60S ribosomal protein L27a
- Chain AL32
- Large ribosomal subunit protein eL32
- Chain ALNW
- 60S ribosomal protein L28
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