IL_9BDN_184

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_184 not in the Motif Atlas

Homologous match to IL_5TBW_061

Geometric discrepancy: 0.0752

The information below is about IL_5TBW_061

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

9BDN|1|A28S|G|2358
9BDN|1|A28S|U|2359
9BDN|1|A28S|A|2360
9BDN|1|A28S|G|2361
9BDN|1|A28S|U|2362
9BDN|1|A28S|A|2363
9BDN|1|A28S|G|2364
*
9BDN|1|A28S|C|3858
9BDN|1|A28S|G|3859
9BDN|1|A28S|A|3860
9BDN|1|A28S|A|3861
9BDN|1|A28S|A|3862
9BDN|1|A28S|C|3863

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL04

60S ribosomal protein L4

Chain AL17

60S ribosomal protein L17