IL_9BDN_227

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGA*UACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_227 not in the Motif Atlas

Homologous match to IL_5TBW_100

Geometric discrepancy: 0.2816

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

9BDN|1|A28S|U|4295
9BDN|1|A28S|U|4296
9BDN|1|A28S|G|4297
9BDN|1|A28S|A|4298
*
9BDN|1|A28S|U|4312
9BDN|1|A28S|A|4313
9BDN|1|A28S|C|4314
9BDN|1|A28S|A|4315

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL05

60S ribosomal protein L5

Chain AL18

Large ribosomal subunit protein eL18

Chain AL21

60S ribosomal protein L21

Chain AL29

Large ribosomal subunit protein eL29

Chain AL42

eL42