IL_9BDN_257

3D structure

PDB id

9BDN (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome with angiogenin and tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

9BDN|1|A28S|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDN_257 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.1778

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

9BDN|1|A28S|G|5000
9BDN|1|A28S|U|5001
9BDN|1|A28S|U|5002
*
9BDN|1|A28S|G|5045
9BDN|1|A28S|U|5046
9BDN|1|A28S|C|5047
9BDN|1|A28S|A|5048
9BDN|1|A28S|G|5049
9BDN|1|A28S|C|5050

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL03

60S ribosomal protein L3

Chain AL24

Ribosomal protein L24

Chain AL31

60S ribosomal protein L31