IL_9BDN_266
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_266 not in the Motif Atlas
- Homologous match to IL_8C3A_148
- Geometric discrepancy: 0.2889
- The information below is about IL_8C3A_148
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.9
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 14
Unit IDs
9BDN|1|A5S|G|71
9BDN|1|A5S|U|72
9BDN|1|A5S|U|73
9BDN|1|A5S|A|74
9BDN|1|A5S|G|75
9BDN|1|A5S|U|76
9BDN|1|A5S|A|77
9BDN|1|A5S|C|78
*
9BDN|1|A5S|G|98
9BDN|1|A5S|G|99
9BDN|1|A5S|A|100
9BDN|1|A5S|A|101
9BDN|1|A5S|U|102
9BDN|1|A5S|A|103
9BDN|1|A5S|C|104
Current chains
- Chain A5S
- 5S rRNA
Nearby chains
- Chain A28S
- Large subunit ribosomal RNA; LSU rRNA
- Chain AL05
- 60S ribosomal protein L5
- Chain AL07
- 60S ribosomal protein L7
- Chain AL10
- Ribosomal protein L10
- Chain AL20
- 60S ribosomal protein L18a
- Chain AL21
- 60S ribosomal protein L21
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