IL_9BDN_300
3D structure
- PDB id
- 9BDN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome with angiogenin and tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 9BDN|1|A18S|G|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDN_300 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3251
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BDN|1|A18S|G|1281
9BDN|1|A18S|A|1282
9BDN|1|A18S|C|1283
9BDN|1|A18S|A|1284
9BDN|1|A18S|G|1285
9BDN|1|A18S|G|1286
9BDN|1|A18S|A|1287
9BDN|1|A18S|U|1288
9BDN|1|A18S|U|1289
9BDN|1|A18S|G|1290
*
9BDN|1|A18S|C|1309
9BDN|1|A18S|U|1310
9BDN|1|A18S|C|1311
9BDN|1|A18S|G|1312
9BDN|1|A18S|A|1313
9BDN|1|A18S|U|1314
9BDN|1|A18S|U|1315
9BDN|1|A18S|C|1316
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS10
- 40S ribosomal protein S10
- Chain AS12
- 40S ribosomal protein S12
- Chain AS29
- 40S ribosomal protein S29
Coloring options: