IL_9BDP_027
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CCACUC*GGAG
- Length
- 10 nucleotides
- Bulged bases
- 9BDP|1|A18S|G|507
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_027 not in the Motif Atlas
- Homologous match to IL_4V88_408
- Geometric discrepancy: 0.1399
- The information below is about IL_4V88_408
- Detailed Annotation
- C-loop with extra cWW pair
- Broad Annotation
- C-loop
- Motif group
- IL_11347.2
- Basepair signature
- cWW-cWW-L-cWW-L
- Number of instances in this motif group
- 3
Unit IDs
9BDP|1|A18S|C|491
9BDP|1|A18S|C|492
9BDP|1|A18S|A|493
9BDP|1|A18S|C|494
9BDP|1|A18S|U|495
9BDP|1|A18S|C|496
*
9BDP|1|A18S|G|506
9BDP|1|A18S|G|507
9BDP|1|A18S|A|508
9BDP|1|A18S|G|509
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS04
- 40S ribosomal protein S4
- Chain AS09
- 40S ribosomal protein S9
- Chain AS24
- 40S ribosomal protein S24
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