IL_9BDP_132

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

9BDP|1|A28S|G|748, 9BDP|1|A28S|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_132 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.2683

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9BDP|1|A28S|G|745
9BDP|1|A28S|A|746
9BDP|1|A28S|A|747
9BDP|1|A28S|G|748
9BDP|1|A28S|G|749
9BDP|1|A28S|U|750
9BDP|1|A28S|G|751
9BDP|1|A28S|G|752
*
9BDP|1|A28S|U|911
9BDP|1|A28S|G|912
9BDP|1|A28S|U|913
9BDP|1|A28S|U|914
9BDP|1|A28S|A|915
9BDP|1|A28S|C|916
9BDP|1|A28S|A|917
9BDP|1|A28S|G|918
9BDP|1|A28S|C|919

Current chains

Chain A28S

28S rRNA

Nearby chains

Chain AL14

60S ribosomal protein L14

Chain AL20

60S ribosomal protein L18a