IL_9BDP_213
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- AGCGG*UACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_213 not in the Motif Atlas
- Geometric match to IL_5TBW_065
- Geometric discrepancy: 0.3829
- The information below is about IL_5TBW_065
- Detailed Annotation
- Multiple bulged bases with near cWW
- Broad Annotation
- Multiple bulged bases with near cWW
- Motif group
- IL_58686.2
- Basepair signature
- cWW-cWW-L-R-cSH-cWW
- Number of instances in this motif group
- 6
Unit IDs
9BDP|1|A28S|A|3894
9BDP|1|A28S|G|3895
9BDP|1|A28S|C|3896
9BDP|1|A28S|G|3897
9BDP|1|A28S|G|3898
*
9BDP|1|A28S|U|4563
9BDP|1|A28S|A|4564
9BDP|1|A28S|C|4565
9BDP|1|A28S|U|4566
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL03
- 60S ribosomal protein L3
- Chain AL16
- Large ribosomal subunit protein uL13
- Chain AL17
- 60S ribosomal protein L17
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