IL_9BDP_245
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_245 not in the Motif Atlas
- Homologous match to IL_8C3A_125
- Geometric discrepancy: 0.1229
- The information below is about IL_8C3A_125
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9BDP|1|A28S|C|4596
9BDP|1|A28S|U|4597
9BDP|1|A28S|C|4598
9BDP|1|A28S|A|4599
9BDP|1|A28S|G|4600
9BDP|1|A28S|U|4601
9BDP|1|A28S|A|4602
9BDP|1|A28S|C|4603
*
9BDP|1|A28S|G|4608
9BDP|1|A28S|G|4609
9BDP|1|A28S|A|4610
9BDP|1|A28S|A|4611
9BDP|1|A28S|C|4612
9BDP|1|A28S|C|4613
9BDP|1|A28S|G|4614
Current chains
- Chain A28S
- 28S rRNA
Nearby chains
- Chain AL03
- 60S ribosomal protein L3
- Chain AL09
- 60S ribosomal protein L9
- Chain AL23
- 60S ribosomal protein L23
- Chain AL40
- Large ribosomal subunit protein eL40
- Chain EF1A
- Elongation factor 1-alpha
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