IL_9BDP_279

3D structure

PDB id

9BDP (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GGA*UUUU

Length

7 nucleotides

Bulged bases

9BDP|1|A18S|U|1016

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BDP_279 not in the Motif Atlas

Homologous match to IL_8P9A_418

Geometric discrepancy: 0.4135

The information below is about IL_8P9A_418

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

9BDP|1|A18S|G|924
9BDP|1|A18S|G|925
9BDP|1|A18S|A|926
*
9BDP|1|A18S|U|1015
9BDP|1|A18S|U|1016
9BDP|1|A18S|U|1017
9BDP|1|A18S|U|1018

Current chains

Chain A18S

18S rRNA

Nearby chains

Chain AS13

40S ribosomal protein S13

Chain AS27

40S ribosomal protein S27