IL_9BDP_330
3D structure
- PDB id
- 9BDP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GACAGGAUUG*CUCGAUUC
- Length
- 18 nucleotides
- Bulged bases
- 9BDP|1|A18S|G|1285, 9BDP|1|A18S|U|1315
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BDP_330 not in the Motif Atlas
- Homologous match to IL_8P9A_470
- Geometric discrepancy: 0.3376
- The information below is about IL_8P9A_470
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_28304.1
- Basepair signature
- cWW-R-L-R-L-R-L-R-L-L-L-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9BDP|1|A18S|G|1281
9BDP|1|A18S|A|1282
9BDP|1|A18S|C|1283
9BDP|1|A18S|A|1284
9BDP|1|A18S|G|1285
9BDP|1|A18S|G|1286
9BDP|1|A18S|A|1287
9BDP|1|A18S|U|1288
9BDP|1|A18S|U|1289
9BDP|1|A18S|G|1290
*
9BDP|1|A18S|C|1309
9BDP|1|A18S|U|1310
9BDP|1|A18S|C|1311
9BDP|1|A18S|G|1312
9BDP|1|A18S|A|1313
9BDP|1|A18S|U|1314
9BDP|1|A18S|U|1315
9BDP|1|A18S|C|1316
Current chains
- Chain A18S
- 18S rRNA
Nearby chains
- Chain AS10
- 40S ribosomal protein S10
- Chain AS12
- 40S ribosomal protein S12
- Chain AS29
- 40S ribosomal protein S29
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