IL_9BH5_001

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GGG

Length

5 nucleotides

Bulged bases

9BH5|1|A8|G|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_001 not in the Motif Atlas

Homologous match to IL_5TBW_002

Geometric discrepancy: 0.5803

The information below is about IL_5TBW_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.13

Basepair signature

cWW-L-cWW

Number of instances in this motif group

40

Unit IDs

9BH5|1|A5|C|6
9BH5|1|A5|C|7
*
9BH5|1|A8|G|146
9BH5|1|A8|G|147
9BH5|1|A8|G|148

Current chains

Chain A5

28S rRNA

Chain A8

5.8S rRNA

Nearby chains

Chain CG

Large ribosomal subunit protein eL8

Chain CN

Large ribosomal subunit protein eL15

Chain CX

Large ribosomal subunit protein uL23B