IL_9BH5_006
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- CUUAGUAA*UGAAACG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_006 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.125
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A5|C|81
9BH5|1|A5|U|82
9BH5|1|A5|U|83
9BH5|1|A5|A|84
9BH5|1|A5|G|85
9BH5|1|A5|U|86
9BH5|1|A5|A|87
9BH5|1|A5|A|88
*
9BH5|1|A5|U|96
9BH5|1|A5|G|97
9BH5|1|A5|A|98
9BH5|1|A5|A|99
9BH5|1|A5|A|100
9BH5|1|A5|C|101
9BH5|1|A5|G|102
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain CL
- Large ribosomal subunit protein eL13
- Chain CN
- Large ribosomal subunit protein eL15
- Chain CQ
- Large ribosomal subunit protein eL18
- Chain Ca
- Large ribosomal subunit protein uL15
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