IL_9BH5_013

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UAU*AG

Length

5 nucleotides

Bulged bases

9BH5|1|A5|A|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_013 not in the Motif Atlas

Geometric match to IL_4V88_409

Geometric discrepancy: 0.1913

The information below is about IL_4V88_409

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

9BH5|1|A5|U|182
9BH5|1|A5|A|183
9BH5|1|A5|U|184
*
9BH5|1|A5|A|244
9BH5|1|A5|G|245

Current chains

Chain A5

28S rRNA

Nearby chains

Chain A8

5.8S ribosomal RNA; 5.8S rRNA

Chain CY

Large ribosomal subunit protein uL24

Chain Cj

Ribosomal protein L37