IL_9BH5_023

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CC*GUAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_023 not in the Motif Atlas

Geometric match to IL_4LFB_025

Geometric discrepancy: 0.216

The information below is about IL_4LFB_025

Detailed Annotation

Major groove minor groove platform; mini C-loop

Broad Annotation

No text annotation

Motif group

IL_73108.3

Basepair signature

cWW-cWS-cSH-cWW

Number of instances in this motif group

25

Unit IDs

9BH5|1|A5|C|543
9BH5|1|A5|C|544
*
9BH5|1|A5|G|588
9BH5|1|A5|U|589
9BH5|1|A5|A|590
9BH5|1|A5|G|591

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CM

Large ribosomal subunit protein eL14

Chain CS

Large ribosomal subunit protein eL20