IL_9BH5_025

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

UGUUG*CUUG

Length

9 nucleotides

Bulged bases

9BH5|1|A5|G|552

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_025 not in the Motif Atlas

Geometric match to IL_205D_001

Geometric discrepancy: 0.3253

The information below is about IL_205D_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_77658.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

34

Unit IDs

9BH5|1|A5|U|551
9BH5|1|A5|G|552
9BH5|1|A5|U|553
9BH5|1|A5|U|554
9BH5|1|A5|G|555
*
9BH5|1|A5|C|578
9BH5|1|A5|U|579
9BH5|1|A5|U|580
9BH5|1|A5|G|581

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CM

Large ribosomal subunit protein eL14

Chain CS

Large ribosomal subunit protein eL20