IL_9BH5_030

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_030 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2755

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_51313.1

Basepair signature

cWW-L-R-L-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

9BH5|1|A5|G|772
9BH5|1|A5|G|773
9BH5|1|A5|A|774
9BH5|1|A5|U|775
9BH5|1|A5|C|776
*
9BH5|1|A5|G|795
9BH5|1|A5|C|796
9BH5|1|A5|G|797
9BH5|1|A5|C|798
9BH5|1|A5|A|799
9BH5|1|A5|C|800

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CQ

Large ribosomal subunit protein eL18