IL_9BH5_036

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

AUGAAG*UGGAAGU

Length

13 nucleotides

Bulged bases

9BH5|1|A5|G|915

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_036 not in the Motif Atlas

Geometric match to IL_3FTF_001

Geometric discrepancy: 0.2052

The information below is about IL_3FTF_001

Detailed Annotation

Quadruple sheared

Broad Annotation

No text annotation

Motif group

IL_29495.2

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9BH5|1|A5|A|888
9BH5|1|A5|U|889
9BH5|1|A5|G|890
9BH5|1|A5|A|891
9BH5|1|A5|A|892
9BH5|1|A5|G|893
*
9BH5|1|A5|U|910
9BH5|1|A5|G|911
9BH5|1|A5|G|912
9BH5|1|A5|A|913
9BH5|1|A5|A|914
9BH5|1|A5|G|915
9BH5|1|A5|U|916

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CA

Large ribosomal subunit protein uL2

Chain CR

Large ribosomal subunit protein eL19

Chain Cp

Large ribosomal subunit protein eL43