IL_9BH5_046
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GCUAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1055
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_046 not in the Motif Atlas
- Homologous match to IL_8C3A_043
- Geometric discrepancy: 0.1149
- The information below is about IL_8C3A_043
- Detailed Annotation
- C-loop with bulged stacked A's
- Broad Annotation
- C-loop
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
9BH5|1|A5|G|1053
9BH5|1|A5|C|1054
9BH5|1|A5|U|1055
9BH5|1|A5|A|1056
9BH5|1|A5|A|1057
9BH5|1|A5|U|1058
*
9BH5|1|A5|A|1100
9BH5|1|A5|A|1101
9BH5|1|A5|A|1102
9BH5|1|A5|C|1103
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CD
- Large ribosomal subunit protein uL18
- Chain CI
- Large ribosomal subunit protein uL16
- Chain CT
- Large ribosomal subunit protein eL21
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