IL_9BH5_053
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 9BH5|1|A5|U|1383
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_053 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.0974
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
9BH5|1|A5|U|1219
9BH5|1|A5|U|1220
9BH5|1|A5|A|1221
9BH5|1|A5|A|1222
9BH5|1|A5|G|1223
*
9BH5|1|A5|C|1380
9BH5|1|A5|U|1381
9BH5|1|A5|A|1382
9BH5|1|A5|U|1383
9BH5|1|A5|A|1384
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CF
- Large ribosomal subunit protein uL30
- Chain CQ
- Large ribosomal subunit protein eL18
- Chain Ce
- Large ribosomal subunit protein eL32
- Chain Cf
- Large ribosomal subunit protein eL33
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