IL_9BH5_057
3D structure
- PDB id
- 9BH5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- High-resolution C. elegans 80S ribosome structure - class 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.63 Å
Loop
- Sequence
- GACCCCAUAAAA*UGAAAAUGGAUGGCGC
- Length
- 28 nucleotides
- Bulged bases
- 9BH5|1|A5|C|1248, 9BH5|1|A5|A|1354, 9BH5|1|A5|U|1357
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9BH5_057 not in the Motif Atlas
- Geometric match to IL_5TBW_052
- Geometric discrepancy: 0.0994
- The information below is about IL_5TBW_052
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53762.1
- Basepair signature
- cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
9BH5|1|A5|G|1246
9BH5|1|A5|A|1247
9BH5|1|A5|C|1248
9BH5|1|A5|C|1249
9BH5|1|A5|C|1250
9BH5|1|A5|C|1251
9BH5|1|A5|A|1252
9BH5|1|A5|U|1253
9BH5|1|A5|A|1254
9BH5|1|A5|A|1255
9BH5|1|A5|A|1256
9BH5|1|A5|A|1257
*
9BH5|1|A5|U|1351
9BH5|1|A5|G|1352
9BH5|1|A5|A|1353
9BH5|1|A5|A|1354
9BH5|1|A5|A|1355
9BH5|1|A5|A|1356
9BH5|1|A5|U|1357
9BH5|1|A5|G|1358
9BH5|1|A5|G|1359
9BH5|1|A5|A|1360
9BH5|1|A5|U|1361
9BH5|1|A5|G|1362
9BH5|1|A5|G|1363
9BH5|1|A5|C|1364
9BH5|1|A5|G|1365
9BH5|1|A5|C|1366
Current chains
- Chain A5
- 28S rRNA
Nearby chains
- Chain A7
- 5S ribosomal RNA; 5S rRNA
- Chain CB
- Large ribosomal subunit protein uL3
- Chain CI
- Large ribosomal subunit protein uL16
- Chain CO
- Large ribosomal subunit protein uL13
- Chain Cf
- Large ribosomal subunit protein eL33
- Chain Cm
- Ubiquitin-ribosomal protein eL40 fusion protein
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