IL_9BH5_059

3D structure

PDB id

9BH5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

High-resolution C. elegans 80S ribosome structure - class 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

CGU*AGUG

Length

7 nucleotides

Bulged bases

9BH5|1|A5|G|1494

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9BH5_059 not in the Motif Atlas

Homologous match to IL_8C3A_061

Geometric discrepancy: 0.0753

The information below is about IL_8C3A_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_73554.3

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

10

Unit IDs

9BH5|1|A5|C|1441
9BH5|1|A5|G|1442
9BH5|1|A5|U|1443
*
9BH5|1|A5|A|1493
9BH5|1|A5|G|1494
9BH5|1|A5|U|1495
9BH5|1|A5|G|1496

Current chains

Chain A5

28S rRNA

Nearby chains

Chain CC

Large ribosomal subunit protein uL4

Chain Ca

Large ribosomal subunit protein uL15

Chain Ce

Large ribosomal subunit protein eL32